干旱区荒漠稀疏植被覆盖度提取及尺度扩展效应

选择线性混合像元分解模型、亚像元模型、最大三波段梯度差法模型以及修正的三波段梯度差法的2个变异模型来提取植被覆盖度,结合地面实测数据,探讨了提取干旱区荒漠稀疏植被覆盖度信息的适宜模型,并以简单平均法模拟了不同尺度的覆盖度影像,通过尺度上推检验了模型在MODIS尺度上的反演效应.结果表明：线性混合像元分解模型反演覆盖度的精度高于其他模型,适于稀疏植被地区,但端元的正确选取较难,从而影响其运用;亚像元分解模型是一个通用模型,植被分类图越精细,通过亚像元分解模型得到的覆盖度精度越高,但这也同时意味着该模型需要测定大量的输入参数;最大三波段梯度差法的算法简单、易于操作,其在农田等中高植被覆盖区及裸土区的预测值与实测值接近,但对干旱区稀疏植被的估计精度偏低;修正后的三波段最大梯度差法模型在稀疏植被覆盖区的预测值与实测值基本一致,在不同尺度上反演的覆盖度信息与实测值的一致性较好.该方法可有效提取干旱区低覆盖度植被信息.     

气候变化背景下松嫩平原玉米灌溉需水量估算及预测

开展农作物需水规律研究对于干旱半干旱区域旱作物节水灌溉和水分管理实践具有重要意义。以松嫩平原玉米为研究对象,研究玉米生育期需水量规律及灌溉需水量。结果表明:(1)历史时期和未来气候变化情景下,松嫩平原玉米全生育期和L~(mid)时段灌溉需水量等值线沿西南—东北方向递减,其中全生育期和L~(mid)时段2000s灌溉需水量临界等势线(灌溉需水量为0的等势线)分别比1970s北移70.2km和53.4km,全生育期和L~(mid)时段2040s灌溉需水量临界等势线分别比2010s北移30.9km和55.2km。(2)历史时期和气候变化情景下玉米全生育期灌溉需水量随年代呈波动增加趋势,其中前者以29.1mm/(10a)速度增加,后者以17.5mm/(10a)速度增加。(3)未来温度和降雨量变化对玉米需水量的贡献率为波动上升趋势,与1970s相比,2000s温度和降雨量变化对玉米需水量的贡献率为22.1%,增加6.8亿m~3灌溉水量;2040s温度和降雨量变化对玉米需水量的贡献率为38.3%,增加12.6亿m~3灌溉水量。     

Toxicity of Cry1A toxins from Bacillus thuringiensis to CF1 cells does not involve activation of adenylate cyclase/PKA signaling pathway

Bacillus thuringiensis (Bt) bacteria produce Cry toxins that are able to kill insect pests. Different models explaining the mode of action of these toxins have been proposed. The pore formation model proposes that the toxin creates pores in the membrane of the larval midgut cells after interaction with different receptors such as cadherin, aminopeptidase N and alkaline phosphatase and that this pore formation activity is responsible for the toxicity of these proteins. The alternative model proposes that interaction with cadherin receptor triggers an intracellular cascade response involving protein G, adenylate cyclase (AC) and protein kinase A (PKA). In addition, it was shown that Cry toxins induce a defense response in the larvae involving the activation of mitogen-activated kinases such as MAPK p38 in different insect orders. Here we analyzed the mechanism of action of Cry1Ab and Cry1Ac toxins and a collection of mutants from these toxins in the insect cell line CF1 from Choristoneura fumiferana, that is naturally sensitive to these toxins. Our results show that both toxins induced permeability of K⁺ ions into the cells. The initial response after intoxication with Cry1Ab and Cry1Ac toxins involves the activation of a defense response that involves the phosphorylation of MAPK p38. Analysis of activation of PKA and AC activities indicated that the signal transduction involving PKA, AC and cAMP was not activated during Cry1Ab or Cry1Ac intoxication. In contrast we show that Cry1Ab and Cry1Ac activate apoptosis. These data indicate that Cry toxins can induce an apoptotic death response not related with AC/PKA activation. Since Cry1Ab and Cry1Ac toxins affected K⁺ ion permeability into the cells, and that mutant toxins affected in pore formation are not toxic to CF1, we propose that pore formation activity of the toxins is responsible of triggering cell death response in CF1cells.     

Trapped within the city: integrating demography,time since isolation and population‐specific traits to assess the genetic effects of urbanization

Urbanization is a severe form of habitat fragmentation that can cause many species to be locally extirpated and many others to become trapped and isolated within an urban matrix. The role of drift in reducing genetic diversity and increasing genetic differentiation is well recognized in urban populations. However, explicit incorporation and analysis of the demographic and temporal factors promoting drift in urban environments are poorly studied. Here, we genotyped 15 microsatellites in 320 fire salamanders from the historical city of Oviedo (Est. 8th century) to assess the effects of time since isolation, demographic history (historical effective population size; N_e) and patch size on genetic diversity, population structure and contemporary N_e. Our results indicate that urban populations of fire salamanders are highly differentiated, most likely due to the recent N_e declines, as calculated in coalescence analyses, concomitant with the urban development of Oviedo. However, urbanization only caused a small loss of genetic diversity. Regression modelling showed that patch size was positively associated with contemporary N_e, while we found only moderate support for the effects of demographic history when excluding populations with unresolved history. This highlights the interplay between different factors in determining current genetic diversity and structure. Overall, the results of our study on urban populations of fire salamanders provide some of the very first insights into the mechanisms affecting changes in genetic diversity and population differentiation via drift in urban environments, a crucial subject in a world where increasing urbanization is forecasted.     

Purging putative siblings from population genetic data sets: a cautionary view

Interest has surged recently in removing siblings from population genetic data sets before conducting downstream analyses. However, even if the pedigree is inferred correctly, this has the potential to do more harm than good. We used computer simulations and empirical samples of coho salmon to evaluate strategies for adjusting samples to account for family structure. We compared performance in full samples and sibling‐reduced samples of estimators of allele frequency (), population differentiation () and effective population size (). Results: (i) unless simulated samples included large family groups together with a component of unrelated individuals, removing siblings generally reduced precision of and ; (ii) based on the linkage disequilibrium method was largely unbiased using full random samples but became increasingly upwardly biased under aggressive purging of siblings. Under nonrandom sampling (some families over‐represented), using full samples was downwardly biased; removing just the right ‘Goldilocks’ fraction of siblings could produce an unbiased estimate, but this sweet spot varied widely among scenarios; (iii) weighting individuals based on the inferred pedigree (to produce a best linear unbiased estimator, BLUE) maximized precision of when the inferred pedigree was correct but performed poorly when the pedigree was wrong; (iv) a variant of sibling removal that leaves intact small sibling groups appears to be more robust to errors in inferences about family structure. Our results illustrate the complex challenges posed by presence of family structure, suggest that no single optimal solution exists and argue for caution in adjusting population genetic data sets for the presence of putative siblings without fully understanding the consequences.     

Whole‐genome sequencing approaches for conservation biology: Advantages,limitations and practical recommendations

Whole‐genome resequencing (WGR) is a powerful method for addressing fundamental evolutionary biology questions that have not been fully resolved using traditional methods. WGR includes four approaches: the sequencing of individuals to a high depth of coverage with either unresolved or resolved haplotypes, the sequencing of population genomes to a high depth by mixing equimolar amounts of unlabelled‐individual DNA (Pool‐seq) and the sequencing of multiple individuals from a population to a low depth (lcWGR). These techniques require the availability of a reference genome. This, along with the still high cost of shotgun sequencing and the large demand for computing resources and storage, has limited their implementation in nonmodel species with scarce genomic resources and in fields such as conservation biology. Our goal here is to describe the various WGR methods, their pros and cons and potential applications in conservation biology. WGR offers an unprecedented marker density and surveys a wide diversity of genetic variations not limited to single nucleotide polymorphisms (e.g., structural variants and mutations in regulatory elements), increasing their power for the detection of signatures of selection and local adaptation as well as for the identification of the genetic basis of phenotypic traits and diseases. Currently, though, no single WGR approach fulfils all requirements of conservation genetics, and each method has its own limitations and sources of potential bias. We discuss proposed ways to minimize such biases. We envision a not distant future where the analysis of whole genomes becomes a routine task in many nonmodel species and fields including conservation biology.     

Vegetation cover change and driving factors in Fujian Province between 1975 and 2014

Aims Fujian Province has been one of the most severe soil erosion regions since Ming and Qing Dynasty in China. Recently, several ecological restoration projects have been implemented and they have significantly changed vegetation cover in this region.
Methods We analyzed the four-decade vegetation cover change in Fujian Province using seven time-series data of Landsat Multispectral Scanner (MSS), Thematic Mapper (TM), and Operational Land Imager (OLI) between 1975 and 2014. We further explored the possible drivers on vegetation cover change by incorporating statistical data of plantation, cropland and urbanized area.
Important findings Vegetation coverage in Fujian Province has increased from 69.0% to 77.8% between 1975 and 2014. However, a slight decrease was observed between 1995 and 2005. Spatially, forest was the primary vegetation type in the northwest, where croplands and human settlements were scattered along rivers or oceans. Shrubs and bare lands were also scattered across the northwest. In southwest, the areas of bare land, shrub land and cropland decreased, while areas of forest and human settlements expanded. The vegetation coverage and urbanized area increased at the cost of cropland and bare land.     

Understanding the effect of landscape fragmentation and vegetation productivity on elephant habitat utilization in Amboseli ecosystem,Kenya

Understanding factors affecting the distribution of the African elephant is important for its conservation in increasingly human‐dominated savannah landscapes. However, understanding how landscape fragmentation and vegetation productivity affect elephant habitat utilization remains poorly understood. In this study, we tested whether landscape fragmentation and vegetation productivity explain elephant habitat utilization in the Amboseli ecosystem in Kenya. We used GPS (Global Positioning System) telemetry data from five elephants to quantify elephant habitat utilization. Habitat utilization was determined by calculating the time elephants spent within a unit area. We then used generalized additive models (GAMs) to model the relationship between time density and landscape fragmentation, as well as vegetation productivity. Results show that landscape fragmentation and vegetation productivity significantly (P < 0.05) explain elephant habitat utilization. A significant (P < 0.05) unimodal relationship between vegetation productivity and habitat utilization was observed. Results suggest that elephants spend much of their time in less fragmented landscapes of intermediate productivity.     

A Multisite Strategy for Enhancing the Hydrogen Evolution Reaction on a Nano‐Pd Surface in Alkaline Media

The hydrogen evolution reaction (HER) on a noble metal surface in alkaline media is more sluggish than that in acidic media due to the limited proton supply. To promote the reaction, it is necessary to transform the alkaline HER mechanism via a multisite catalyst, which has additional water dissociation sites to improve the proton supply to an optimal level. Here, this study reports a top‐down strategy to create a multisite HER catalyst on a nano‐Pd surface and how to further fine‐tune the areal ratio of the water dissociation component to the noble metal surface in core/shell‐structured nanoparticles (NPs). Starting with Pd/Fe₃O₄ core/shell NPs, electrochemical cycling is used to tune the coverage of iron (oxy)hydroxide on a Pd surface. The alkaline HER activity of the core/sell Pd/FeO_x (OH)_2?2x NPs exhibits a volcano‐shaped correlation with the surface Fe species coverage. This indicates an optimum coverage level where the rates of both the water dissociation step and the hydrogen formation step are balanced to achieve the highest efficiency. This multisite strategy assigns multiple reaction steps to different catalytic sites, and should also be extendable to other core/shell NPs to optimize their HER activity in alkaline media.     

圆红冬孢酵母的密码子用法分析

运用CodonW等软件,分析了圆红冬孢酵母Rhodosporidium toruloides基因组中191个蛋白质编码基因的密码子使用模式,包括密码子3个位置上的GC含量、有效密码子数和密码子使用频率。圆红冬孢酵母有效密码子数ENc值为38.9,密码子GC含量为63%,密码子第三位GC含量为78.3%,且偏好使用G或C结尾的密码子,确定了圆红冬孢酵母R. toruloides的21个高表达优越密码子。研究发现,圆红冬孢酵母与毕赤酵母、酿酒酵母、大肠杆菌和拟南芥在密码子使用频率上有较大差异,而与解脂耶氏酵母和果蝇差异相对较小。研究结果对提高外源基因在圆红冬孢酵母中表达效率及相关代谢工程和合成生物学研究有一定意义。